Sequence Similarity Clusters for the Entities in PDB 1LQ8

Entity #1 | Chains: A,C,E,G
plasma serine protease inhibitor protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5840
95 % 5 5 6490 Flexibility: Medium
Max RMSD: 11.5, Avg RMSD: 4.5
PDBFlex
90 % 5 5 6490
70 % 5 5 6322
50 % 29 50 879
40 % 64 99 411
30 % 95 180 188
Entity #2 | Chains: B,D,F,H
plasma serine protease inhibitor protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16852
95 % 2 2 15699 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 15408
70 % 2 2 14444
50 % 2 2 12800
40 % 2 2 11586
30 % 2 2 10073

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures