Sequence Similarity Clusters for the Entities in PDB 1LQ8

Entity #1 | Chains: A,C,E,G
plasma serine protease inhibitor protein, length: 346 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6481
95 % 5 5 6625 Flexibility: Medium
Max RMSD: 11.5, Avg RMSD: 4.5
PDBFlex
90 % 5 5 6618
70 % 5 5 6397
50 % 36 57 794
40 % 88 132 262
30 % 106 193 182
Entity #2 | Chains: B,D,F,H
plasma serine protease inhibitor protein, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 16043
95 % 2 2 14926 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 2 2 14616
70 % 2 2 13677
50 % 2 2 12107
40 % 2 2 10860
30 % 2 2 9244

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures