Sequence Similarity Clusters for the Entities in PDB 1LPZ

Entity #1 | Chains: A
Blood coagulation factor Xa protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 39 988
95 % 37 40 1322 Flexibility: No
Max RMSD: 3.8, Avg RMSD: 0.4
PDBFlex
90 % 37 40 1347
70 % 37 40 1364
50 % 53 74 739
40 % 53 74 770
30 % 53 74 764
Entity #2 | Chains: B
Blood coagulation factor Xa protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 86 119 208
95 % 98 134 247
90 % 98 134 261
70 % 98 135 288
50 % 606 677 14
40 % 1390 1682 4
30 % 1499 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.