Sequence Similarity Clusters for the Entities in PDB 1LPJ

Entity #1 | Chains: A
Retinol-binding protein IV, cellular protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43833
95 % 2 2 28109 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 2 2 27033
70 % 2 2 24394
50 % 44 54 536
40 % 157 215 153
30 % 525 766 22

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures