Sequence Similarity Clusters for the Entities in PDB 1LPG

Entity #1 | Chains: A
Blood coagulation factor Xa protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 39 966
95 % 23 40 1302 Flexibility: No
Max RMSD: 3.8, Avg RMSD: 0.4
PDBFlex
90 % 23 40 1326
70 % 23 40 1348
50 % 31 74 710
40 % 31 74 745
30 % 31 74 735
Entity #2 | Chains: B
Blood coagulation factor Xa protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 119 207
95 % 56 134 242 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 56 134 255
70 % 56 135 283
50 % 521 677 13
40 % 1104 1669 4
30 % 1190 1811 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.