Sequence Similarity Clusters for the Entities in PDB 1LPG

Entity #1 | Chains: A
Blood coagulation factor Xa protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 39 996
95 % 23 40 1335 Flexibility: No
Max RMSD: 3.8, Avg RMSD: 0.4
PDBFlex
90 % 23 40 1361
70 % 23 40 1378
50 % 31 74 746
40 % 31 74 781
30 % 31 74 773
Entity #2 | Chains: B
Blood coagulation factor Xa protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 119 211
95 % 56 134 250 Flexibility: No
Max RMSD: 2.3, Avg RMSD: 0.5
PDBFlex
90 % 56 134 265
70 % 56 135 292
50 % 522 678 14
40 % 1116 1684 4
30 % 1202 1833 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.