Sequence Similarity Clusters for the Entities in PDB 1LPA

Entity #1 | Chains: A
COLIPASE protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48422
95 % 3 6 11057 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.3
PDBFlex
90 % 3 6 10914
70 % 3 6 10352
50 % 3 6 9369
40 % 3 6 8569
30 % 3 6 7542
Entity #2 | Chains: B
LIPASE protein, length: 449 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26129
95 % 2 3 22124 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.9
PDBFlex
90 % 2 3 21482
70 % 6 10 4656
50 % 8 12 3870
40 % 8 12 3718
30 % 8 12 3475

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures