Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 204 53
95 % 128 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 141 309 36
70 % 336 736 6
50 % 341 750 6
40 % 356 792 10
30 % 384 923 15
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 311 634 2
95 % 338 678 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 341 687 4
70 % 405 940 4
50 % 411 962 3
40 % 411 962 7
30 % 411 962 12
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9632
95 % 1 4 9764 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 4 9653
70 % 1 5 7121
50 % 70 334 76
40 % 70 334 98
30 % 1627 5951 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9322
95 % 4 10 3874 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 6 21 1525
70 % 73 343 25
50 % 73 346 67
40 % 73 346 89
30 % 1628 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures