Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 90 197 52
95 % 122 246 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 135 290 36
70 % 318 684 6
50 % 319 689 6
40 % 337 739 10
30 % 360 856 15
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 296 593 2
95 % 323 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 326 645 4
70 % 384 875 4
50 % 390 897 4
40 % 390 897 9
30 % 390 897 14
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9030
95 % 1 4 9210 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 4 9118
70 % 1 5 6687
50 % 46 287 83
40 % 46 287 102
30 % 1417 5392 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8749
95 % 1 4 9003 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 16 1892
70 % 49 297 45
50 % 49 300 77
40 % 49 300 95
30 % 1418 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.