Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 89 195 50
95 % 121 244 55
90 % 132 284 33
70 % 303 649 7
50 % 304 654 7
40 % 321 701 11
30 % 344 817 14
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 283 568 2
95 % 310 611 3
90 % 313 620 4
70 % 370 847 5
50 % 375 867 4
40 % 375 867 9
30 % 375 867 13
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 8561
95 % 1 4 8744
90 % 1 4 8663
70 % 1 5 6346
50 % 44 280 80
40 % 44 280 97
30 % 1327 5034 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 8289
95 % 1 4 8541
90 % 3 16 1784
70 % 47 290 42
50 % 47 293 75
40 % 47 293 90
30 % 1328 5034 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.