Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 204 52
95 % 128 255 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 141 308 35
70 % 331 727 6
50 % 332 732 6
40 % 351 783 10
30 % 379 907 15
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 307 624 2
95 % 334 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 337 677 4
70 % 399 922 4
50 % 405 944 3
40 % 405 944 7
30 % 405 944 12
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9370
95 % 1 4 9534 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 4 9426
70 % 1 5 6967
50 % 51 305 82
40 % 51 305 99
30 % 1513 5705 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 9073
95 % 4 10 3791 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 6 21 1492
70 % 54 314 28
50 % 54 317 73
40 % 54 317 94
30 % 1514 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures