Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 212 58
95 % 128 257 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 141 311 36
70 % 342 746 6
50 % 347 760 7
40 % 363 812 9
30 % 394 939 13
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 337 675 2
95 % 346 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 349 699 4
70 % 414 953 4
50 % 420 975 3
40 % 420 975 6
30 % 420 975 9
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 10396
95 % 1 4 10112 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 1 4 9983
70 % 71 340 28
50 % 71 341 77
40 % 71 341 99
30 % 2087 7240 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8857
95 % 4 10 3870 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 6 21 1544
70 % 74 350 25
50 % 74 353 67
40 % 74 353 87
30 % 2088 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures