Sequence Similarity Clusters for the Entities in PDB 1LP9

Entity #1 | Chains: A,H
HLA class I histocompatibility antigen, A-2 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 92 199 53
95 % 125 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 138 297 36
70 % 324 705 6
50 % 325 710 6
40 % 344 761 10
30 % 369 881 15
Entity #2 | Chains: B,I
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 300 607 2
95 % 327 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 330 660 4
70 % 392 898 4
50 % 398 920 3
40 % 398 920 8
30 % 398 920 12
Entity #3 | Chains: C,J
self-peptide P1049 protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: E,L
T-cell Receptor alpha chain protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 9142
95 % 1 4 9338
90 % 1 4 9240
70 % 1 5 6824
50 % 47 292 82
40 % 47 292 99
30 % 1437 5461 1
Entity #5 | Chains: F,M
T-cell Receptor beta chain protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 8854
95 % 1 4 9124 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.5
PDBFlex
90 % 3 16 1915
70 % 50 302 41
50 % 50 305 77
40 % 50 305 93
30 % 1438 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.