Sequence Similarity Clusters for the Entities in PDB 1LP1

Entity #1 | Chains: A
Affibody binding protein Z protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 49761
95 % 1 2 37131
90 % 1 2 35440
70 % 13 37 1177
50 % 13 37 1221
40 % 13 37 1229
30 % 13 37 1202
Entity #2 | Chains: B
Immunoglobulin G binding protein A protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11150
95 % 1 11 6297 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 6 16 2992
70 % 14 37 1177
50 % 14 37 1221
40 % 14 37 1229
30 % 14 37 1202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures