Sequence Similarity Clusters for the Entities in PDB 1LP1

Entity #1 | Chains: A
Affibody binding protein Z protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 47406
95 % 1 2 35430
90 % 1 2 33872
70 % 13 37 1118
50 % 13 37 1157
40 % 13 37 1167
30 % 13 37 1144
Entity #2 | Chains: B
Immunoglobulin G binding protein A protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 10561
95 % 1 11 5960 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 6 16 2836
70 % 14 37 1118
50 % 14 37 1157
40 % 14 37 1167
30 % 14 37 1144

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.