Sequence Similarity Clusters for the Entities in PDB 1LP1

Entity #1 | Chains: A
Affibody binding protein Z protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 48767
95 % 1 2 36431
90 % 1 2 34804
70 % 13 37 1154
50 % 13 37 1189
40 % 13 37 1203
30 % 13 37 1178
Entity #2 | Chains: B
Immunoglobulin G binding protein A protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 10902
95 % 1 11 6172 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 6 16 2923
70 % 14 37 1154
50 % 14 37 1189
40 % 14 37 1203
30 % 14 37 1178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.