Sequence Similarity Clusters for the Entities in PDB 1LP1

Entity #1 | Chains: A
Affibody binding protein Z protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 50396
95 % 1 2 37597
90 % 1 2 35874
70 % 17 41 1099
50 % 17 41 1148
40 % 17 41 1162
30 % 17 41 1138
Entity #2 | Chains: B
Immunoglobulin G binding protein A protein, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 11342
95 % 1 11 6391 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.5
PDBFlex
90 % 6 16 3029
70 % 18 41 1099
50 % 18 41 1148
40 % 18 41 1162
30 % 18 41 1138

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures