Sequence Similarity Clusters for the Entities in PDB 1LOT

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 13733
95 % 6 6 7086
90 % 6 6 7052
70 % 6 6 6856
50 % 6 6 6338
40 % 6 6 5915
30 % 6 6 5294
Entity #2 | Chains: B
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 123 21
95 % 90 174 15
90 % 92 179 16
70 % 95 182 25
50 % 95 184 38
40 % 98 203 41
30 % 101 223 53

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.