Sequence Similarity Clusters for the Entities in PDB 1LOT

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 8090
95 % 6 6 8190 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.5
PDBFlex
90 % 6 6 8116
70 % 6 6 7827
50 % 6 6 7177
40 % 6 6 6630
30 % 6 6 5802
Entity #2 | Chains: B
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 150 8
95 % 91 205 9 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 0.9
PDBFlex
90 % 93 211 9
70 % 97 216 11
50 % 97 223 15
40 % 100 242 24
30 % 103 262 38

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures