Sequence Similarity Clusters for the Entities in PDB 1LOT

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14845
95 % 6 6 7682 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 6 6 7630
70 % 6 6 7424
50 % 6 6 6837
40 % 6 6 6370
30 % 6 6 5700
Entity #2 | Chains: B
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 137 8
95 % 91 197 8 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 93 202 10
70 % 97 207 11
50 % 97 214 15
40 % 100 233 23
30 % 103 253 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures