Sequence Similarity Clusters for the Entities in PDB 1LOT

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 14301
95 % 6 6 7422
90 % 6 6 7379
70 % 6 6 7188
50 % 6 6 6623
40 % 6 6 6170
30 % 6 6 5524
Entity #2 | Chains: B
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 123 22
95 % 90 179 15
90 % 92 184 15
70 % 96 188 23
50 % 96 191 37
40 % 99 210 39
30 % 102 230 52

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.