Sequence Similarity Clusters for the Entities in PDB 1LOT

Entity #1 | Chains: A
Vitamin D-binding protein protein, length: 458 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14538
95 % 6 6 7538 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.5
PDBFlex
90 % 6 6 7488
70 % 6 6 7296
50 % 6 6 6717
40 % 6 6 6260
30 % 6 6 5600
Entity #2 | Chains: B
Actin, alpha skeletal muscle protein, length: 375 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 61 123 23
95 % 90 180 15 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 92 185 15
70 % 96 190 23
50 % 96 193 35
40 % 99 212 40
30 % 102 232 54

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.