Sequence Similarity Clusters for the Entities in PDB 1LOG

Entity #1 | Chains: A,C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2378
95 % 3 10 2326 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 10 19 1267
70 % 10 20 1232
50 % 10 20 1290
40 % 10 20 1303
30 % 10 20 1277
Entity #2 | Chains: B,D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2415
95 % 3 10 2350 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 3 10 2417
70 % 10 20 1238
50 % 10 20 1297
40 % 10 20 1312
30 % 10 20 1287

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures