Sequence Similarity Clusters for the Entities in PDB 1LOG

Entity #1 | Chains: A,C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2226
95 % 3 10 2201 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 10 19 1199
70 % 10 20 1182
50 % 10 20 1230
40 % 10 20 1244
30 % 10 20 1220
Entity #2 | Chains: B,D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 2264
95 % 3 10 2225 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 3 10 2292
70 % 10 20 1187
50 % 10 20 1234
40 % 10 20 1250
30 % 10 20 1226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.