Sequence Similarity Clusters for the Entities in PDB 1LOF

Entity #1 | Chains: A
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 14 1484
95 % 10 14 1753 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 14 19 1326
70 % 14 20 1283
50 % 14 20 1338
40 % 14 20 1328
30 % 14 20 1319
Entity #2 | Chains: B
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 2645
95 % 7 10 2394 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 7 10 2465
70 % 14 20 1282
50 % 14 20 1337
40 % 14 20 1327
30 % 14 20 1318
Entity #3 | Chains: C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 14 1484
95 % 11 14 1753 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 15 19 1326
70 % 15 20 1283
50 % 15 20 1338
40 % 15 20 1328
30 % 15 20 1319
Entity #4 | Chains: D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 2645
95 % 8 10 2394 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 8 10 2465
70 % 15 20 1282
50 % 15 20 1337
40 % 15 20 1327
30 % 15 20 1318

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures