Sequence Similarity Clusters for the Entities in PDB 1LOF

Entity #1 | Chains: A
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2308
95 % 7 10 2265 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 14 19 1231
70 % 14 20 1213
50 % 14 20 1264
40 % 14 20 1276
30 % 14 20 1248
Entity #2 | Chains: B
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 2344
95 % 7 10 2288 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 7 10 2353
70 % 14 20 1219
50 % 14 20 1271
40 % 14 20 1284
30 % 14 20 1256
Entity #3 | Chains: C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62509
95 % 8 10 2265 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 15 19 1231
70 % 15 20 1213
50 % 15 20 1264
40 % 15 20 1276
30 % 15 20 1248
Entity #4 | Chains: D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73173
95 % 8 10 2288 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 8 10 2353
70 % 15 20 1219
50 % 15 20 1271
40 % 15 20 1284
30 % 15 20 1256

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.