Sequence Similarity Clusters for the Entities in PDB 1LOE

Entity #1 | Chains: A,C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 14 1463
95 % 3 14 1734 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 5 19 1303
70 % 5 20 1270
50 % 5 20 1332
40 % 5 20 1323
30 % 5 20 1317
Entity #2 | Chains: B,D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 2633
95 % 1 10 2375 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 1 10 2445
70 % 5 20 1269
50 % 5 20 1331
40 % 5 20 1322
30 % 5 20 1316

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures