Sequence Similarity Clusters for the Entities in PDB 1LOE

Entity #1 | Chains: A,C
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2220
95 % 1 10 2188 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 5 19 1199
70 % 5 20 1182
50 % 5 20 1230
40 % 5 20 1243
30 % 5 20 1220
Entity #2 | Chains: B,D
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 2259
95 % 1 10 2213 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 1 10 2280
70 % 5 20 1187
50 % 5 20 1234
40 % 5 20 1249
30 % 5 20 1226

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.