Sequence Similarity Clusters for the Entities in PDB 1LOD

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 2243
95 % 5 10 2221 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 12 19 1207
70 % 12 20 1190
50 % 12 20 1244
40 % 12 20 1256
30 % 12 20 1232
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 2280
95 % 5 10 2245 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 5 10 2312
70 % 12 20 1194
50 % 12 20 1249
40 % 12 20 1262
30 % 12 20 1238

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.