Sequence Similarity Clusters for the Entities in PDB 1LOD

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 2102
95 % 5 10 2075
90 % 12 19 1136
70 % 12 20 1130
50 % 12 20 1179
40 % 12 20 1197
30 % 12 20 1170
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 2136
95 % 5 10 2108
90 % 5 10 2172
70 % 12 20 1135
50 % 12 20 1181
40 % 12 20 1201
30 % 12 20 1174

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.