Sequence Similarity Clusters for the Entities in PDB 1LOD

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 2178
95 % 5 10 2148
90 % 12 19 1177
70 % 12 20 1163
50 % 12 20 1216
40 % 12 20 1224
30 % 12 20 1201
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 7 2212
95 % 5 10 2176
90 % 5 10 2245
70 % 12 20 1169
50 % 12 20 1220
40 % 12 20 1232
30 % 12 20 1209

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.