Sequence Similarity Clusters for the Entities in PDB 1LOC

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2383
95 % 4 10 2335 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 11 19 1270
70 % 11 20 1234
50 % 11 20 1294
40 % 11 20 1306
30 % 11 20 1278
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2420
95 % 4 10 2361 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 4 10 2428
70 % 11 20 1240
50 % 11 20 1301
40 % 11 20 1315
30 % 11 20 1288
Entity #3 | Chains: 1,2,3,4
MURAMYL-DIPEPTIDE D-ALA-D-IGLN protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures