Sequence Similarity Clusters for the Entities in PDB 1LOC

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2244
95 % 4 10 2222 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 11 19 1208
70 % 11 20 1191
50 % 11 20 1246
40 % 11 20 1258
30 % 11 20 1234
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 2282
95 % 4 10 2246 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 4 10 2313
70 % 11 20 1195
50 % 11 20 1251
40 % 11 20 1264
30 % 11 20 1240
Entity #3 | Chains: 1,2,3,4
MURAMYL-DIPEPTIDE D-ALA-D-IGLN protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.