Sequence Similarity Clusters for the Entities in PDB 1LOB

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 2268
95 % 2 10 2245 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 19 1218
70 % 7 20 1201
50 % 7 20 1253
40 % 7 20 1267
30 % 7 20 1240
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 2306
95 % 2 10 2269 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 2 10 2335
70 % 7 20 1206
50 % 7 20 1259
40 % 7 20 1274
30 % 7 20 1247

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.