Sequence Similarity Clusters for the Entities in PDB 1LOA

Entity #1 | Chains: A,C,E,G
LEGUME ISOLECTIN I (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 14 1416
95 % 9 14 1671 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 13 19 1260
70 % 13 20 1237
50 % 13 20 1300
40 % 13 20 1287
30 % 13 20 1278
Entity #2 | Chains: B,D,F,H
LEGUME ISOLECTIN I (BETA CHAIN) protein, length: 52 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 2558
95 % 6 10 2301 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 6 10 2372
70 % 13 20 1236
50 % 13 20 1299
40 % 13 20 1286
30 % 13 20 1277

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures