Sequence Similarity Clusters for the Entities in PDB 1LO5

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 86 91 217
95 % 93 98 258 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 108 114 222
70 % 108 114 242
50 % 160 170 175
40 % 160 170 188
30 % 332 353 85
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 40 613
95 % 43 43 685 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 90 94 287
70 % 159 169 151
50 % 161 171 174
40 % 161 171 187
30 % 333 353 85
Entity #3 | Chains: C
Hemagglutinin peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
enterotoxin A protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 16401
95 % 6 7 6818 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 7 6809
70 % 8 9 5205
50 % 8 9 4948
40 % 8 9 4653
30 % 85 90 364

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures