Sequence Similarity Clusters for the Entities in PDB 1LO5

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 77 82 227
95 % 84 89 281 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 99 105 235
70 % 99 105 266
50 % 151 161 184
40 % 151 161 195
30 % 313 334 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 38 594
95 % 41 41 749
90 % 80 84 325
70 % 142 152 161
50 % 151 161 183
40 % 151 161 194
30 % 314 334 98
Entity #3 | Chains: C
Hemagglutinin peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
enterotoxin A protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61118
95 % 6 7 6593 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 7 6585
70 % 8 9 5244
50 % 8 9 5001
40 % 8 9 4722
30 % 84 89 349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures