Sequence Similarity Clusters for the Entities in PDB 1LO5

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 74 227
95 % 76 81 288 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 91 97 233
70 % 91 97 264
50 % 139 149 176
40 % 139 149 191
30 % 289 310 98
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 38 566
95 % 41 41 713 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 72 76 333
70 % 130 140 161
50 % 139 149 175
40 % 139 149 190
30 % 290 310 98
Entity #3 | Chains: C
Hemagglutinin peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
enterotoxin A protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58693
95 % 6 7 6306 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 7 6287
70 % 8 9 4996
50 % 8 9 4779
40 % 8 9 4523
30 % 83 88 322

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.