Sequence Similarity Clusters for the Entities in PDB 1LO5

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 71 230
95 % 73 78 295 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 88 94 237
70 % 88 94 270
50 % 136 146 177
40 % 136 146 193
30 % 283 304 100
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 38 563
95 % 41 41 704
90 % 69 73 342
70 % 127 137 162
50 % 136 146 176
40 % 136 146 192
30 % 284 304 100
Entity #3 | Chains: C
Hemagglutinin peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
enterotoxin A protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58005
95 % 6 7 6239
90 % 6 7 6219
70 % 8 9 4934
50 % 8 9 4726
40 % 8 9 4473
30 % 83 88 319

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.