Sequence Similarity Clusters for the Entities in PDB 1LO5

Entity #1 | Chains: A
HLA class II histocompatibility antigen, DR alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 74 233
95 % 76 81 298 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 91 97 239
70 % 91 97 273
50 % 139 149 180
40 % 139 149 196
30 % 289 310 100
Entity #2 | Chains: B
HLA class II histocompatibility antigen, DR-1 beta chain protein, length: 190 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 38 578
95 % 41 41 732
90 % 72 76 343
70 % 130 140 166
50 % 139 149 179
40 % 139 149 195
30 % 290 310 100
Entity #3 | Chains: C
Hemagglutinin peptide protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
enterotoxin A protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59517
95 % 6 7 6408 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 7 6389
70 % 8 9 5074
50 % 8 9 4855
40 % 8 9 4595
30 % 84 89 327

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures