Sequence Similarity Clusters for the Entities in PDB 1LO4

Entity #1 | Chains: L
If kappa light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60361
95 % 108 146 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 116 156 148
70 % 1303 2329 1
50 % 2658 4717 1
40 % 2658 4717 1
30 % 3058 5571 1
Entity #2 | Chains: H
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60025
95 % 1 1 42200
90 % 1 1 40228
70 % 1288 2282 2
50 % 2659 4717 1
40 % 2659 4717 1
30 % 3059 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.