Sequence Similarity Clusters for the Entities in PDB 1LO4

Entity #1 | Chains: L
If kappa light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61487
95 % 108 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 116 156 149
70 % 1359 2416 1
50 % 2772 4892 1
40 % 2772 4892 1
30 % 3182 5759 1
Entity #2 | Chains: H
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61143
95 % 1 1 42956
90 % 1 1 40911
70 % 1343 2366 2
50 % 2773 4892 1
40 % 2773 4892 1
30 % 3183 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures