Sequence Similarity Clusters for the Entities in PDB 1LO4

Entity #1 | Chains: L
If kappa light chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62381
95 % 108 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 116 158 148
70 % 1398 2479 1
50 % 2852 5021 1
40 % 2852 5021 1
30 % 3310 5951 1
Entity #2 | Chains: H
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62035
95 % 1 1 43556
90 % 1 1 41463
70 % 1382 2429 2
50 % 2853 5021 1
40 % 2853 5021 1
30 % 3311 5951 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures