Sequence Similarity Clusters for the Entities in PDB 1LO2

Entity #1 | Chains: L,X
If kappa light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12970
95 % 2 3 12329 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 52 162 146
70 % 640 2516 1
50 % 1315 5101 1
40 % 1543 5750 1
30 % 1892 7168 1
Entity #2 | Chains: H,Y
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 12969
95 % 2 3 12328
90 % 2 3 12144
70 % 636 2475 2
50 % 1316 5101 1
40 % 1544 5750 1
30 % 1893 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures