Sequence Similarity Clusters for the Entities in PDB 1LO0

Entity #1 | Chains: L,X
If kappa light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13519
95 % 1 3 12845 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 51 162 152
70 % 649 2637 1
50 % 1343 5362 1
40 % 1577 6051 1
30 % 1925 7514 1
Entity #2 | Chains: H,Y
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13518
95 % 1 3 12844 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12634
70 % 650 2600 2
50 % 1344 5362 1
40 % 1578 6051 1
30 % 1926 7514 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LO0 2 H, Y Ig gamma 2a heavy chain 10090
2 1LO2 2 H, Y Ig gamma 2a heavy chain 10090
3 1LO3 2 H, Y Ig gamma 2a heavy chain 10090