Sequence Similarity Clusters for the Entities in PDB 1LO0

Entity #1 | Chains: L,X
If kappa light chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13123
95 % 1 3 12481 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 51 162 147
70 % 634 2576 1
50 % 1307 5225 1
40 % 1534 5883 1
30 % 1877 7321 1
Entity #2 | Chains: H,Y
Ig gamma 2a heavy chain protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13122
95 % 1 3 12480 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 1 3 12291
70 % 632 2532 2
50 % 1308 5225 1
40 % 1535 5883 1
30 % 1878 7321 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LO0 2 H, Y Ig gamma 2a heavy chain 10090
2 1LO2 2 H, Y Ig gamma 2a heavy chain 10090
3 1LO3 2 H, Y Ig gamma 2a heavy chain 10090