Sequence Similarity Clusters for the Entities in PDB 1LNU

Entity #1 | Chains: A,C,E,G
H-2 class II histocompatibility antigen, A-B alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3216
95 % 7 16 2214
90 % 8 23 1384
70 % 17 44 712
50 % 64 146 173
40 % 64 146 186
30 % 131 304 83
Entity #2 | Chains: B,D,F,H
H-2 class II histocompatibility antigen, A beta chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 6100
95 % 2 8 4211
90 % 2 8 4233
70 % 62 137 163
50 % 64 146 172
40 % 64 146 185
30 % 132 304 83

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.