Sequence Similarity Clusters for the Entities in PDB 1LNU

Entity #1 | Chains: A,C,E,G
H-2 class II histocompatibility antigen, A-B alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3414
95 % 7 16 2352 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 8 23 1477
70 % 17 44 756
50 % 66 149 180
40 % 66 149 196
30 % 135 310 99
Entity #2 | Chains: B,D,F,H
H-2 class II histocompatibility antigen, A beta chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 6478
95 % 2 8 4455 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 8 4486
70 % 64 140 166
50 % 66 149 179
40 % 66 149 195
30 % 136 310 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.