Sequence Similarity Clusters for the Entities in PDB 1LNU

Entity #1 | Chains: A,C,E,G
H-2 class II histocompatibility antigen, A-B alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3488
95 % 7 16 2407 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 11 26 1399
70 % 21 48 695
50 % 77 161 179
40 % 77 161 194
30 % 157 334 89
Entity #2 | Chains: B,D,F,H
H-2 class II histocompatibility antigen, A beta chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 6602
95 % 2 8 4542 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 8 4567
70 % 75 152 159
50 % 77 161 178
40 % 77 161 193
30 % 158 334 89

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures