Sequence Similarity Clusters for the Entities in PDB 1LNU

Entity #1 | Chains: A,C,E,G
H-2 class II histocompatibility antigen, A-B alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3541
95 % 7 16 2445 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 11 26 1422
70 % 21 48 705
50 % 77 161 184
40 % 77 161 195
30 % 157 334 98
Entity #2 | Chains: B,D,F,H
H-2 class II histocompatibility antigen, A beta chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 6713
95 % 2 8 4610 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 2 8 4644
70 % 75 152 161
50 % 77 161 183
40 % 77 161 194
30 % 158 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures