Sequence Similarity Clusters for the Entities in PDB 1LNU

Entity #1 | Chains: A,C,E,G
H-2 class II histocompatibility antigen, A-B alpha chain protein, length: 182 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 9 3176
95 % 7 16 2189
90 % 8 23 1370
70 % 16 42 742
50 % 62 142 180
40 % 62 142 193
30 % 127 296 100
Entity #2 | Chains: B,D,F,H
H-2 class II histocompatibility antigen, A beta chain protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 5994
95 % 2 8 4158
90 % 2 8 4179
70 % 60 133 166
50 % 62 142 179
40 % 62 142 192
30 % 128 296 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.