Sequence Similarity Clusters for the Entities in PDB 1LNG

Entity #1 | Chains: B
7S.S SRP RNA rna, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
Signal recognition particle 19 kDa protein protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 14637
95 % 1 5 11257 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 1 5 11113
70 % 1 5 10534
50 % 1 5 9523
40 % 1 5 8703
30 % 1 5 7653

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures