Sequence Similarity Clusters for the Entities in PDB 1LMW

Entity #1 | Chains: A,C
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2333
95 % 20 20 2994
90 % 20 20 3034
70 % 20 20 2998
50 % 20 20 2950
40 % 20 20 2894
30 % 20 20 2711
Entity #2 | Chains: B,D
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4123
95 % 104 112 328 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 104 112 347
70 % 107 117 371
50 % 107 117 431
40 % 1689 1864 4
30 % 1701 1886 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures