Sequence Similarity Clusters for the Entities in PDB 1LMW

Entity #1 | Chains: A,C
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2039
95 % 20 20 2657
90 % 20 20 2701
70 % 20 20 2677
50 % 20 20 2633
40 % 20 20 2601
30 % 20 20 2433
Entity #2 | Chains: B,D
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 8 3607
95 % 104 111 279
90 % 104 111 290
70 % 104 111 327
50 % 104 111 386
40 % 109 122 348
30 % 1578 1748 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.