Sequence Similarity Clusters for the Entities in PDB 1LMW

Entity #1 | Chains: A,C
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2305
95 % 20 20 2950
90 % 20 20 2990
70 % 20 20 2955
50 % 20 20 2907
40 % 20 20 2853
30 % 20 20 2676
Entity #2 | Chains: B,D
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 4048
95 % 104 112 320 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 104 112 338
70 % 107 117 364
50 % 107 117 424
40 % 112 128 396
30 % 1691 1870 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures