Sequence Similarity Clusters for the Entities in PDB 1LMW

Entity #1 | Chains: A,C
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2131
95 % 20 20 2774
90 % 20 20 2819
70 % 20 20 2788
50 % 20 20 2749
40 % 20 20 2715
30 % 20 20 2529
Entity #2 | Chains: B,D
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3744
95 % 104 111 297 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 104 111 312
70 % 104 111 352
50 % 104 111 415
40 % 109 122 378
30 % 1638 1811 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.