Sequence Similarity Clusters for the Entities in PDB 1LMW

Entity #1 | Chains: A,C
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 20 2176
95 % 20 20 2819
90 % 20 20 2861
70 % 20 20 2831
50 % 20 20 2793
40 % 20 20 2750
30 % 20 20 2572
Entity #2 | Chains: B,D
UROKINASE-TYPE PLASMINOGEN ACTIVATOR protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 8 3842
95 % 104 112 299 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 104 112 315
70 % 107 117 335
50 % 107 117 395
40 % 112 128 355
30 % 1653 1831 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.