Sequence Similarity Clusters for the Entities in PDB 1LMB

Entity #1 | Chains: 1
DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 2
DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: 3,4
PROTEIN (LAMBDA REPRESSOR) protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11317
95 % 1 4 8123 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 1 4 8053
70 % 1 4 7796
50 % 1 4 7161
40 % 1 4 6616
30 % 1 4 5784

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LMB 3 3, 4 PROTEIN (LAMBDA REPRESSOR) 10710
2 1LLI 3 A, B PROTEIN (LAMBDA REPRESSOR) 10710
3 1RIO 4 A, B Repressor protein CI cI-N-terminus domain 10710
4 1LRP 1 A, B, C LAMBDA REPRESSOR 10710