Sequence Similarity Clusters for the Entities in PDB 1LMB

Entity #1 | Chains: 1
DNA (5'-D(*AP*AP*TP*AP*CP*CP*AP*CP*TP*GP*GP*CP*GP*GP*TP*GP*A P*TP*AP*T)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 2
DNA (5'-D(*TP*AP*TP*AP*TP*CP*AP*CP*CP*GP*CP*CP*AP*GP*TP*GP*G P*TP*AP*T)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: 3,4
PROTEIN (LAMBDA REPRESSOR) protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 11071
95 % 1 4 7949 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 1 4 7875
70 % 1 4 7619
50 % 1 4 7009
40 % 1 4 6476
30 % 1 4 5669

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LMB 3 3, 4 PROTEIN (LAMBDA REPRESSOR) 10710
2 1LLI 3 A, B PROTEIN (LAMBDA REPRESSOR) 10710
3 1RIO 4 A, B Repressor protein CI cI-N-terminus domain 10710
4 1LRP 1 A, B, C LAMBDA REPRESSOR 10710