Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 857
95 % 2 20 1105
90 % 2 20 1130
70 % 2 20 1172
50 % 2 20 1221
40 % 2 20 1236
30 % 2 20 1210
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 37 212
95 % 2 38 298
90 % 2 38 312
70 % 2 38 350
50 % 2 38 407
40 % 2 38 443
30 % 2 39 436
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 25 261
95 % 2 25 381
90 % 2 25 410
70 % 2 25 454
50 % 2 25 528
40 % 2 25 568
30 % 2 25 564
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70799
95 % 1 1 49470
90 % 1 1 47035
70 % 1 1 41400
50 % 1 1 35510
40 % 1 1 31389
30 % 1 1 26691

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.