Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 802
95 % 2 20 1035
90 % 2 20 1058
70 % 2 20 1101
50 % 2 20 1151
40 % 2 20 1172
30 % 2 20 1147
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 36 208
95 % 2 37 291
90 % 2 37 305
70 % 2 37 327
50 % 2 37 355
40 % 2 37 388
30 % 2 38 387
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 262
95 % 2 24 382
90 % 2 24 407
70 % 2 24 441
50 % 2 24 511
40 % 2 24 547
30 % 2 24 551
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 67374
95 % 1 1 47131
90 % 1 1 44860
70 % 1 1 39581
50 % 1 1 33985
40 % 1 1 30054
30 % 1 1 25553

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.