Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 783
95 % 2 20 1006
90 % 2 20 1031
70 % 2 20 1074
50 % 2 20 1126
40 % 2 20 1148
30 % 2 20 1123
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 36 202
95 % 2 37 286
90 % 2 37 298
70 % 2 37 320
50 % 2 37 342
40 % 2 37 377
30 % 2 38 376
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 261
95 % 2 24 376
90 % 2 24 399
70 % 2 24 427
50 % 2 24 474
40 % 2 24 512
30 % 2 24 518
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66164
95 % 1 1 46304
90 % 1 1 44114
70 % 1 1 38998
50 % 1 1 33494
40 % 1 1 29634
30 % 1 1 25187

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.