Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 789
95 % 2 20 1019
90 % 2 20 1042
70 % 2 20 1087
50 % 2 20 1136
40 % 2 20 1161
30 % 2 20 1134
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 36 206
95 % 2 37 290
90 % 2 37 304
70 % 2 37 325
50 % 2 37 348
40 % 2 37 380
30 % 2 38 381
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 261
95 % 2 24 376
90 % 2 24 399
70 % 2 24 430
50 % 2 24 498
40 % 2 24 533
30 % 2 24 537
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 66550
95 % 1 1 46575
90 % 1 1 44344
70 % 1 1 39175
50 % 1 1 33643
40 % 1 1 29766
30 % 1 1 25295

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.