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An Information Portal to 109822 Biological Macromolecular Structures

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Sequence Clustering and Redundancy Reduction Results
1LM8
Sequence Clusters for the Sequence Entities in PDB 1LM8
Entity #1: Chains: B - ELONGIN B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 712
95% 2 20 931
90% 2 20 956
70% 2 20 994
50% 2 20 1036
40% 2 20 1055
30% 2 20 1035
Entity #2: Chains: C - ELONGIN C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 35 197
95% 2 36 280
90% 2 36 292
70% 2 36 312
50% 2 36 340
40% 2 36 369
30% 2 37 367
Entity #3: Chains: V - Von Hippel-Lindau disease tumor suppressor protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 24 244
95% 2 24 346
90% 2 24 370
70% 2 24 394
50% 2 24 433
40% 2 24 463
30% 2 24 470
Entity #4: Chains: H - Hypoxia-inducible factor 1 alpha protein, length: 20 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61577
95% 1 1 43256
90% 1 1 41289
70% 1 1 36615
50% 1 1 31524
40% 1 1 27930
30% 1 1 23794
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.