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An Information Portal to 111558 Biological Macromolecular Structures

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Sequence Clustering and Redundancy Reduction Results
1LM8
Sequence Clusters for the Sequence Entities in PDB 1LM8
Entity #1: Chains: B - ELONGIN B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 728
95% 2 20 948
90% 2 20 975
70% 2 20 1013
50% 2 20 1059
40% 2 20 1079
30% 2 20 1054
Entity #2: Chains: C - ELONGIN C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 36 191
95% 2 37 262
90% 2 37 274
70% 2 37 298
50% 2 37 323
40% 2 37 354
30% 2 38 358
Entity #3: Chains: V - Von Hippel-Lindau disease tumor suppressor protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 24 250
95% 2 24 352
90% 2 24 376
70% 2 24 399
50% 2 24 441
40% 2 24 474
30% 2 24 482
Entity #4: Chains: H - Hypoxia-inducible factor 1 alpha protein, length: 20 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 62509
95% 1 1 43874
90% 1 1 41867
70% 1 1 37109
50% 1 1 31934
40% 1 1 28289
30% 1 1 24091
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.