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An Information Portal to 106082 Biological Macromolecular Structures

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Sequence Clustering and Redundancy Reduction Results
1LM8
Sequence Clusters for the Sequence Entities in PDB 1LM8
Entity #1: Chains: B - ELONGIN B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 17 693
95% 2 19 912
90% 2 19 936
70% 2 19 972
50% 2 19 1016
40% 2 19 1045
30% 2 19 1021
Entity #2: Chains: C - ELONGIN C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 34 187
95% 2 35 262
90% 2 35 274
70% 2 35 294
50% 2 35 333
40% 2 35 357
30% 2 36 361
Entity #3: Chains: V - Von Hippel-Lindau disease tumor suppressor protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 24 237
95% 2 24 334
90% 2 24 354
70% 2 24 379
50% 2 24 417
40% 2 24 448
30% 2 24 462
Entity #4: Chains: H - Hypoxia-inducible factor 1 alpha protein, length: 20 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 59610
95% 1 1 41936
90% 1 1 40063
70% 1 1 35594
50% 1 1 30665
40% 1 1 27168
30% 1 1 23153
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.