Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 21 968
95 % 2 21 1177 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 21 1199
70 % 2 21 1232
50 % 2 21 1285
40 % 2 21 1279
30 % 2 21 1277
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 52 186
95 % 2 52 239 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 2 52 248
70 % 2 52 279
50 % 2 52 312
40 % 2 53 341
30 % 2 53 346
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 38 222
95 % 2 38 286 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 2 38 297
70 % 2 38 344
50 % 2 38 412
40 % 2 38 438
30 % 2 38 449
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64345
95 % 1 1 52226
90 % 1 1 49529
70 % 1 1 43354
50 % 1 1 34418
40 % 1 1 30162
30 % 1 1 25186

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures