Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 18 765
95 % 2 20 983
90 % 2 20 1008
70 % 2 20 1050
50 % 2 20 1104
40 % 2 20 1121
30 % 2 20 1099
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 36 199
95 % 2 37 278
90 % 2 37 291
70 % 2 37 313
50 % 2 37 334
40 % 2 37 366
30 % 2 38 371
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 24 258
95 % 2 24 370
90 % 2 24 393
70 % 2 24 417
50 % 2 24 464
40 % 2 24 503
30 % 2 24 506
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64901
95 % 1 1 45445
90 % 1 1 43305
70 % 1 1 38316
50 % 1 1 32922
40 % 1 1 29152
30 % 1 1 24790

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.