Sequence Similarity Clusters for the Entities in PDB 1LM8

Entity #1 | Chains: B
ELONGIN B protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 18 919
95 % 2 20 1176 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 20 1203
70 % 2 20 1239
50 % 2 20 1293
40 % 2 20 1307
30 % 2 20 1283
Entity #2 | Chains: C
ELONGIN C protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 47 172
95 % 2 48 231 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 2 48 246
70 % 2 48 278
50 % 2 48 312
40 % 2 48 330
30 % 2 49 336
Entity #3 | Chains: V
Von Hippel-Lindau disease tumor suppressor protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 35 212
95 % 2 35 295 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 2 35 306
70 % 2 35 353
50 % 2 35 415
40 % 2 35 442
30 % 2 35 442
Entity #4 | Chains: H
Hypoxia-inducible factor 1 alpha protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74656
95 % 1 1 52223
90 % 1 1 49559
70 % 1 1 43428
50 % 1 1 37105
40 % 1 1 32775
30 % 1 1 27870

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.