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An Information Portal to 109093 Biological Macromolecular Structures

Structure of a HIF-1a-pVHL-ElonginB-ElonginC Complex
Sequence Clustering and Redundancy Reduction Results
1LM8
Sequence Clusters for the Sequence Entities in PDB 1LM8
Entity #1: Chains: B - ELONGIN B protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 18 710
95% 2 20 927
90% 2 20 952
70% 2 20 987
50% 2 20 1026
40% 2 20 1050
30% 2 20 1030
Entity #2: Chains: C - ELONGIN C protein, length: 96 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 35 197
95% 2 36 280
90% 2 36 292
70% 2 36 311
50% 2 36 339
40% 2 36 367
30% 2 37 366
Entity #3: Chains: V - Von Hippel-Lindau disease tumor suppressor protein, length: 160 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 24 244
95% 2 24 345
90% 2 24 368
70% 2 24 391
50% 2 24 431
40% 2 24 462
30% 2 24 467
Entity #4: Chains: H - Hypoxia-inducible factor 1 alpha protein, length: 20 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 61191
95% 1 1 43005
90% 1 1 41046
70% 1 1 36413
50% 1 1 31355
40% 1 1 27770
30% 1 1 23651
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.