Sequence Similarity Clusters for the Entities in PDB 1LLM

Entity #1 | Chains: A,B
5'-D(*TP*CP*CP*CP*AP*CP*GP*CP*GP*TP*GP*GP*G)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C,D
chimera of Zif23-GCN4 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 47970
95 % 1 1 35826 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 1 34211
70 % 1 1 30407
50 % 1 1 25980
40 % 1 1 22903
30 % 1 1 19399

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1LLM 2 C, D chimera of Zif23-GCN4 The Zif23 section of the chimera is residues 2-50 and is derived from Zif268. The GCN4 section is residues 60-88. 10090