Sequence Similarity Clusters for the Entities in PDB 1LK3

Entity #1 | Chains: A,B
Interleukin-10 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32839
95 % 2 7 8744 Flexibility: Medium
Max RMSD: 18.4, Avg RMSD: 9.5
PDBFlex
90 % 2 10 6531
70 % 2 11 5152
50 % 2 11 4897
40 % 2 11 4579
30 % 2 11 4127
Entity #2 | Chains: L,M
9D7 Light Chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35714
95 % 1 1 30467 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29225
70 % 392 2519 1
50 % 802 5107 1
40 % 977 5756 1
30 % 1200 7175 1
Entity #3 | Chains: H,I
9D7 Heavy Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42294
95 % 1 1 30468 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29226
70 % 392 2478 2
50 % 803 5107 1
40 % 978 5756 1
30 % 1201 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures