Sequence Similarity Clusters for the Entities in PDB 1LK3

Entity #1 | Chains: A,B
Interleukin-10 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43757
95 % 2 7 9606 Flexibility: Medium
Max RMSD: 18.4, Avg RMSD: 9.5
PDBFlex
90 % 2 10 6457
70 % 2 11 5122
50 % 2 11 4901
40 % 2 11 4641
30 % 2 11 4248
Entity #2 | Chains: L,M
9D7 Light Chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41453
95 % 1 1 31536 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 30173
70 % 357 2362 1
50 % 731 4781 1
40 % 731 4781 1
30 % 794 5635 1
Entity #3 | Chains: H,I
9D7 Heavy Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40550
95 % 1 1 31035 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29827
70 % 356 2311 2
50 % 732 4781 1
40 % 732 4781 1
30 % 795 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures