Sequence Similarity Clusters for the Entities in PDB 1LK3

Entity #1 | Chains: A,B
Interleukin-10 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43208
95 % 2 7 9486 Flexibility: Medium
Max RMSD: 18.4, Avg RMSD: 9.5
PDBFlex
90 % 2 10 6367
70 % 2 11 5053
50 % 2 11 4835
40 % 2 11 4577
30 % 2 11 4194
Entity #2 | Chains: L,M
9D7 Light Chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40935
95 % 1 1 31148 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29817
70 % 342 2287 1
50 % 700 4633 1
40 % 700 4633 1
30 % 763 5461 1
Entity #3 | Chains: H,I
9D7 Heavy Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40053
95 % 1 1 30662 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29475
70 % 342 2244 2
50 % 701 4633 1
40 % 701 4633 1
30 % 764 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.