Sequence Similarity Clusters for the Entities in PDB 1LK3

Entity #1 | Chains: A,B
Interleukin-10 protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42614
95 % 2 7 9372 Flexibility: Medium
Max RMSD: 18.4, Avg RMSD: 9.4
PDBFlex
90 % 2 10 6294
70 % 2 11 4982
50 % 2 11 4773
40 % 2 11 4519
30 % 2 11 4140
Entity #2 | Chains: L,M
9D7 Light Chain protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40348
95 % 1 1 30685 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 29390
70 % 340 2264 1
50 % 696 4587 1
40 % 696 4587 1
30 % 754 5394 1
Entity #3 | Chains: H,I
9D7 Heavy Chain protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39473
95 % 1 1 30202 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 29046
70 % 340 2222 2
50 % 697 4587 1
40 % 697 4587 1
30 % 755 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.