Sequence Similarity Clusters for the Entities in PDB 1LJW

Entity #1 | Chains: A
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 258 12
95 % 184 269 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 184 269 19
70 % 210 337 18
50 % 497 765 4
40 % 502 770 7
30 % 975 1323 6
Entity #2 | Chains: B
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 218 43
95 % 181 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 184 259 20
70 % 227 352 15
50 % 498 765 4
40 % 503 770 7
30 % 976 1323 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2W72 1 A HUMAN HEMOGLOBIN A CHAIN ALPHA, RESIDUES 2-142 9606
2 2W72 3 C HUMAN HEMOGLOBIN A CHAIN ALPHA, RESIDUES 2-142 9606
3 1IRD 1 A Hemoglobin alpha chain 9606
4 2DN2 1 A, C Hemoglobin alpha subunit 9606
5 2DN3 1 A Hemoglobin alpha subunit 9606
6 2DN1 1 A Hemoglobin alpha subunit 9606
7 6IHX 1 A, C Hemoglobin subunit alpha 9913
8 1J41 1 A, C, E, G Hemoglobin alpha Chain 9606
9 1J40 1 A, C, E, G Hemoglobin alpha Chain 9606
10 1BAB 1 A, C HEMOGLOBIN THIONVILLE (DEOXY) (ALPHA CHAIN) 9606
11 3S66 1 A Hemoglobin subunit alpha 9606
12 2D5Z 1 A, C Hemoglobin alpha subunit 9606
13 1BZ0 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
14 5EUI 1 A HBA protein 9978
15 1UIW 1 A, C, E, G Hemoglobin alpha chain 9606
16 1J3Y 1 A, C, E, G Hemoglobin alpha Chain 9606
17 3QJD 1 A, C Hemoglobin subunit alpha 9606
18 1THB 1 A, C HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
19 1BZZ 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
20 5WOG 1 A, B Hemoglobin subunit alpha 9606
21 1J3Z 1 A, C, E, G Hemoglobin alpha Chain 9606
22 1BZ1 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
23 3NMM 1 A, C Hemoglobin subunit alpha 9606
24 5WOH 1 A, C Hemoglobin subunit alpha 9606
25 4HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
26 1J7Y 1 A, C Hemoglobin alpha chain 9606
27 1DXV 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
28 1DXT 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
29 1DXU 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
30 6BWP 1 A, C Hemoglobin subunit alpha 9606
31 3DUT 1 A, C Hemoglobin subunit alpha 9606
32 1SDK 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
33 2HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
34 1QSH 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
35 4ROL 1 A, C Hemoglobin subunit alpha 9606
36 1SDL 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY 9606
37 1BBB 1 A, C HEMOGLOBIN A (CARBONMONOXY) (ALPHA CHAIN) 9606
38 1QSI 1 A, C PROTEIN (HEMOGLOBIN ALPHA CHAIN) 9606
39 4MQG 1 A Hemoglobin subunit alpha 9606
40 2QSS 1 A, C Hemoglobin subunit alpha 9913
41 2D60 1 A, C Hemoglobin alpha subunit 9606
42 2W6V 1 A, C HEMOGLOBIN SUBUNIT ALPHA CHAIN ALPHA, RESIDUES 2-142 9606
43 1GBU 1 A, C HEMOGLOBIN DEOXY 9606
44 1NQP 1 A, C Hemoglobin alpha chain 9606
45 1QI8 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
46 1A01 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
47 1A3N 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
48 3QJB 1 A Hemoglobin subunit alpha 9606
49 5E83 1 A, C Hemoglobin subunit alpha 9606
50 1YE2 1 A, C Hemoglobin alpha chain 9606
51 1A3O 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
52 1O1O 1 A, C Hemoglobin Alpha chain 9606
53 5KSI 1 A, C Hemoglobin subunit alpha 9606
54 5E6E 1 A Hemoglobin subunit alpha 9606
55 4MQJ 1 A, C, E, G Hemoglobin subunit alpha 9606
56 3HHB 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
57 1R1Y 1 A, C Hemoglobin alpha chain 9606
58 1K0Y 1 A, C hemoglobin alpha chain 9606
59 1YVQ 1 A, C Hemoglobin alpha chain 9606
60 5UCU 1 A Hemoglobin subunit alpha 9606
61 1C7B 1 A, C PROTEIN (DEOXYHEMOGLOBIN (ALPHA CHAIN)) 9606
62 3NL7 1 A Hemoglobin subunit alpha 9606
63 1SHR 1 A, C Hemoglobin alpha chain 9606
64 1Y4V 1 A, C Hemoglobin alpha chain 9606
65 5URC 1 A, C Hemoglobin subunit alpha 9606
66 1G9V 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
67 1YVT 1 A Hemoglobin alpha chain 9606
68 1CLS 1 A, C HEMOGLOBIN CROSS-LINKED DEOXY FORM 9606
69 1VWT 1 A, C HEMOGLOBIN ALPHA AQUOMET, BETA DEOXY 9606
70 1QXE 1 A, C Hemoglobin alpha chain alpha chain 9606
71 1RQ3 1 A, C Hemoglobin alpha chain 9606
72 1XZ2 1 A, C Hemoglobin alpha chain 9606
73 3QJE 1 A, C Hemoglobin subunit alpha 9606
74 4L7Y 1 A, C Hemoglobin subunit alpha 9606
75 5SW7 1 A Hemoglobin subunit alpha 9606
76 2QSP 1 A, C Hemoglobin subunit alpha 9913
77 1XZ7 1 A, C Hemoglobin alpha chain 9606
78 3D7O 1 A Hemoglobin subunit alpha 9606
79 3IC0 1 A, C Hemoglobin subunit alpha 9606
80 1BUW 1 A, C PROTEIN (HEMOGLOBIN) THE SULFHYDRYL GROUPS OF CYSTEINE 93 OF BETA SUBUNITS ARE S-NITROSYLATED. THE HEME GROUPS ARE NITROSYLATED. 9606
81 1XXT 1 A, C Hemoglobin alpha chain 9606
82 1HBB 1 A, C HEMOGLOBIN A (DEOXY) (ALPHA CHAIN) 9606
83 1KD2 1 A, C Hemoglobin alpha chain 9606
84 5E29 1 A, C Hemoglobin subunit alpha 9606
85 3WHM 1 A, E Hemoglobin subunit alpha 9606
86 1A0Z 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
87 6DI4 1 A, C Hemoglobin subunit alpha 9606
88 1Y83 1 A, C Hemoglobin alpha chain 9606
89 1A00 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
90 1G08 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
91 1Y7Z 1 A, C Hemoglobin alpha chain 9606
92 2RAO 1 A, C Hemoglobin subunit alpha-1/2 9986
93 4N8T 1 A Hemoglobin subunit alpha 9606
94 2HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY), ALPHA CHAIN 9606
95 1Y7D 1 A, C Hemoglobin alpha chain 9606
96 1Y4G 1 A, C Hemoglobin alpha chain 9606
97 4MQI 1 A Hemoglobin subunit alpha 9606
98 1Y45 1 A, C Hemoglobin alpha chain 9606
99 4NI1 1 A Hemoglobin subunit alpha 9606
100 1J7W 1 A, C hemoglobin alpha chain 9606
101 2HHD 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
102 1YIH 1 A, C Hemoglobin alpha chain 9606
103 1K1K 1 A HEMOGLOBIN ALPHA CHAIN 9606
104 3OO4 1 A Hemoglobin subunit alpha 9606
105 1GBV 1 A, C HEMOGLOBIN ALPHA-OXY, BETA-DEOXY, T STATE 9606
106 2HBE 1 A HEMOGLOBIN A (N-BUTYL ISOCYANIDE) (ALPHA CHAIN) 9606
107 1Y4F 1 A, C Hemoglobin alpha chain 9606
108 1XY0 1 A, C Hemoglobin alpha chain 9606
109 4ROM 1 A, C Hemoglobin subunit alpha 9606
110 1XZ4 1 A, C Hemoglobin alpha chain 9606
111 1Y5J 1 A, C Hemoglobin alpha chain 9606
112 1Y4P 1 A, C Hemoglobin alpha chain 9606
113 1Y2Z 1 A, C Hemoglobin alpha chain 9606
114 6BNR 1 A, C Hemoglobin subunit alpha 9606
115 4X0L 1 A Hemoglobin subunit alpha 9606
116 1HDB 1 A, C HEMOGLOBIN (DEOXY) BETA-V67T ALPHA-BETA-ALPHA-BETA TETRAMER 9606
117 1YHE 1 A, C Hemoglobin alpha chain 9606
118 5U3I 1 A, C Hemoglobin subunit alpha 9606
119 1XZV 1 A, C Hemoglobin alpha chain 9606
120 3S65 1 A, C Hemoglobin subunit alpha 9606
121 6HBW 1 A, C PROTEIN (HEMOGLOBIN ALPHA 1) 9606
122 1Y31 1 A, C Hemoglobin alpha chain 9606
123 1G0A 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
124 1Y0D 1 A, C Hemoglobin alpha chain Residues 1-140 9606
125 3QJC 1 A Hemoglobin subunit alpha 9606
126 1Y85 1 A, C Hemoglobin alpha chain 9606
127 1HBA 1 A, C HEMOGLOBIN ROTHSCHILD (DEOXY) (ALPHA CHAIN) 9606
128 1AJ9 1 A HEMOGLOBIN (ALPHA CHAIN) 9606
129 3CY5 1 A, C Hemoglobin subunit alpha-2 89462
130 2HBC 1 A HEMOGLOBIN A (ETHYL ISOCYANIDE) (ALPHA CHAIN) 9606
131 1Y0W 1 A, C Hemoglobin alpha chain 9606
132 6BWU 1 A Hemoglobin subunit alpha 9606
133 1XZ5 1 A, C Hemoglobin alpha chain 9606
134 1Y0T 1 A, C Hemoglobin alpha chain 9606
135 1Y4Q 1 A, C Hemoglobin alpha chain 9606
136 1Y35 1 A, C Hemoglobin alpha chain 9606
137 1J7S 1 A, C Hemoglobin alpha chain 9606
138 1Y5F 1 A, C Hemoglobin alpha chain 9606
139 3WCP 1 A, C Hemoglobin subunit alpha 9606
140 1G09 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
141 1A0U 1 A, C HEMOGLOBIN (ALPHA CHAIN) 9606
142 1RPS 1 A, C Hemoglobin alpha chain 9606
143 1Y7G 1 A, C Hemoglobin alpha chain 9606
144 1Y5K 1 A, C Hemoglobin alpha chain 9606
145 1Y22 1 A, C Hemoglobin alpha chain 9606
146 1O1K 1 A, C Hemoglobin Alpha chain 9606
147 1XZU 1 A, C Hemoglobin alpha chain 9606
148 1Y09 1 A, C Hemoglobin alpha chain 9606
149 3PIA 1 A, C Hemoglobin subunit alpha 9913
150 1RQA 1 A, C Hemoglobin alpha chain 9606
151 1Y4R 1 A, C Hemoglobin alpha chain 9606
152 1GZX 1 A, C HEMOGLOBIN ALPHA CHAIN LIGANDED T STATE 9606
153 1Y4B 1 A, C Hemoglobin alpha chain 9606
154 2HHE 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
155 2HBD 1 A HEMOGLOBIN A (METHYL ISOCYANIDE) (ALPHA CHAIN) 9606
156 3P5Q 1 A Hemoglobin subunit alpha 9606
157 1DKE 1 A, C HEMOGLOBIN: ALPHA CHAIN 9606
158 1HGA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9606
159 1HGC 1 A, C HEMOGLOBIN (OXY) (ALPHA CHAIN) 9606
160 2HBF 1 A HEMOGLOBIN A (N-PROPYL ISOCYANIDE) (ALPHA CHAIN) 9606
161 1Y0A 1 A, C Hemoglobin alpha chain 9606
162 1YEV 1 A, C Hemoglobin alpha chain 9606
163 1YZI 1 A Hemoglobin alpha chain 9606
164 3HXN 1 A, C Hemoglobin subunit alpha 9606
165 5UFJ 1 A, C Hemoglobin subunit alpha 9606
166 1XYE 1 A, C Hemoglobin alpha chain 9606
167 1RQ4 1 A, C Hemoglobin alpha chain 9606
168 6HAL 1 A, C Hemoglobin subunit alpha 9606
169 2YRS 1 A, C, I, M Hemoglobin subunit alpha 9606
170 5KDQ 1 A, C Hemoglobin subunit alpha 9606
171 1Y7C 1 A, C Hemoglobin alpha chain 9606
172 4MQK 1 A, C, E, G Hemoglobin subunit alpha 9606
173 4M4B 1 A Hemoglobin subunit alpha 9606
174 1FSX 1 A, C HEMOGLOBIN ALPHA CHAIN 9913
175 1HGB 1 A, C HEMOGLOBIN (AQUO MET) (ALPHA CHAIN) 9606
176 1YEO 1 A, C Hemoglobin alpha chain 9606
177 1Y0C 1 A, C Hemoglobin alpha chain 9606
178 1YEU 1 A, C Hemoglobin alpha chain 9606
179 4M4A 1 A Hemoglobin subunit alpha 9606
180 1O1I 1 A Hemoglobin Alpha chain 9606
181 1YH9 1 A, C Hemoglobin alpha chain 9606
182 1MKO 1 A, C Hemoglobin alpha chain 9606
183 1Y46 1 A, C Hemoglobin alpha chain 9606
184 1LJW 1 A hemoglobin alpha chain 9606
185 3ONZ 1 A Hemoglobin subunit alpha Hemoglobin Chain A 9606
186 1HHO 1 A HEMOGLOBIN A (OXY) (ALPHA CHAIN) 9606
187 1M9P 1 A, C Hemoglobin alpha chain 9606
188 1BIJ 1 A, C HEMOGLOBIN A LYS B82/D82 CROSSLINKED HEMOGLOBIN 9606
189 1HAB 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
190 1R1X 1 A Hemoglobin alpha chain 9606
191 3R5I 1 A, C Hemoglobin subunit alpha 9606
192 3OO5 1 A Hemoglobin subunit alpha 9606
193 1NEJ 1 A, C Hemoglobin alpha chain alpha chain 9606
194 4MQC 1 A Hemoglobin subunit alpha 9606
195 4NI0 1 A Hemoglobin subunit alpha 9606
196 1SI4 1 A, C Hemoglobin alpha chain 9606
197 1RVW 1 A HEMOGLOBIN CARBONMONXY HEMES 9606
198 1YIE 1 A, C Hemoglobin alpha chain 9606
199 1B86 1 A, C PROTEIN (HEMOGLOBIN; ALPHA CHAIN) 9606
200 5EE4 2 C, E Hemoglobin subunit alpha 9606
201 1HAC 1 A, C HEMOGLOBIN A CROSS-LINKED, CARBONMONOXY FORM 9606
202 6BB5 1 A Hemoglobin subunit alpha 9606
203 5HY8 1 A, C, E, G, S Hemoglobin subunit alpha 9606
204 1QXD 1 A, C Hemoglobin alpha chain alpha chain 9606
205 3PI8 1 A, C Hemoglobin subunit alpha 9913
206 4FC3 1 A Hemoglobin subunit alpha 9606
207 1YE0 1 A, C Hemoglobin alpha chain 9606
208 3IC2 1 A, C Hemoglobin subunit alpha 9606
209 4MQH 1 A Hemoglobin subunit alpha 9606
210 1YHR 1 A, C Hemoglobin alpha chain 9606
211 5KSJ 1 A, C Hemoglobin subunit alpha 9606
212 1Z8U 2 B, D Hemoglobin alpha chain 9606
213 1YFF 1 A, C, E, G Hemoglobin alpha chain 9606
214 1LFQ 1 A Hemoglobin alpha chain 9606
215 1LFT 1 A Hemoglobin alpha chain 9606
216 3B75 1 A, C, E, G, S Hemoglobin subunit alpha 9606
217 1YGF 1 A, C Hemoglobin alpha chain 9606
218 1YG5 1 A, C Hemoglobin alpha chain 9606
219 1LFL 1 A, C, P, R Hemoglobin alpha chain 9606
220 1YDZ 1 A, C Hemoglobin alpha chain 9606
221 1YEN 1 A, C Hemoglobin alpha chain 9606
222 5X2S 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
223 1NIH 1 A, C HEMOGLOBIN (NICKELOUS DEOXY) (ALPHA CHAIN) 9606
224 1YGD 1 A, C Hemoglobin alpha chain 9606
225 5X2U 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
226 1A9W 1 A, C HEMOGLOBIN (ALPHA CHAIN) HUMAN GOWER II EMBRYONIC HEMOGLOBIN 9606
227 1YEQ 1 A, C Hemoglobin alpha chain 9606
228 1FN3 1 A, C HEMOGLOBIN ALPHA CHAIN 9606
229 1Y8W 1 A, C Hemoglobin alpha chain 9606
230 5HU6 1 A Hemoglobin subunit alpha 9606
231 1LFV 1 A Hemoglobin alpha chain 9606
232 5X2T 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
233 4N7O 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
234 3LQD 1 A, C Hemoglobin subunit alpha 9983
235 4XS0 1 A Hemoglobin subunit alpha 9606
236 1LFZ 1 A Hemoglobin alpha chain 9606
237 4N7N 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
238 1JY7 1 A, C, P, R, U, W Hemoglobin alpha chain 9606
239 5JDO 3 C Hemoglobin subunit alpha 9606
240 5JDO 5 E Hemoglobin subunit alpha 9606
241 5X2R 1 A, C, E, G, I, K Hemoglobin subunit alpha 9606
242 3D17 1 A, C Hemoglobin subunit alpha 9606
243 3OVU 3 C Hemoglobin subunit alpha 9606
244 4N7P 1 A, C, E, G, I, K Hemoglobin subunit alpha UNP residues 2-142 9606
245 1LFY 1 A Hemoglobin alpha chain 9606
246 3S48 2 C, D Hemoglobin subunit alpha 9606
247 3SZK 1 A, D Hemoglobin subunit alpha 9606
248 1Y01 2 B Hemoglobin alpha chain 9606
249 3IA3 2 B, D Hemoglobin subunit alpha 9606
250 3PI9 1 A, C Hemoglobin subunit alpha 9913
251 1HBS 1 A, C, E, G HEMOGLOBIN S (DEOXY) (ALPHA CHAIN) 9606
252 4WJG 1 A, F, K, P, U, Z Hemoglobin subunit alpha 9606
253 1CMY 1 A, C HEMOGLOBIN YPSILANTI (CARBONMONOXY) (ALPHA CHAIN) 9606
254 3ODQ 1 A, C Hemoglobin subunit alpha 9606
255 5VMM 1 A, C Hemoglobin subunit alpha 9606
256 3CIU 1 A, C Hemoglobin subunit alpha 9913
257 4IJ2 1 A, C Hemoglobin subunit alpha 9606
258 1YE1 1 A, C Hemoglobin alpha chain 9606
259 5NI1 1 A, C Hemoglobin subunit alpha 9606
260 2M6Z 1 A, C Hemoglobin subunit alpha 9606
261 3KMF 1 A, E Hemoglobin subunit alpha 9606
262 2DXM 1 A, C Hemoglobin subunit alpha 9606
263 2H35 1 A, C Hemoglobin alpha subunit 9606
264 1GLI 1 A, C DEOXYHEMOGLOBIN 9606
265 1HDA 1 A, C HEMOGLOBIN (DEOXY) (ALPHA CHAIN) 9913
266 1COH 1 A, C HEMOGLOBIN (FERROUS CARBONMONOXY) (ALPHA CHAIN) 9606
267 1HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
268 2HCO 1 A HEMOGLOBIN (CARBONMONOXY) (ALPHA CHAIN) 9606
269 1FDH 1 A, B HEMOGLOBIN F (DEOXY) (ALPHA CHAIN) 9606