Sequence Similarity Clusters for the Entities in PDB 1LJW

Entity #1 | Chains: A
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 174 257 14
95 % 183 268 17 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.8
PDBFlex
90 % 183 268 19
70 % 208 335 18
50 % 493 761 4
40 % 498 766 7
30 % 971 1319 6
Entity #2 | Chains: B
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 153 218 42
95 % 181 254 25 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 184 259 20
70 % 225 350 15
50 % 494 761 4
40 % 499 766 7
30 % 972 1319 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures