Sequence Similarity Clusters for the Entities in PDB 1LJW

Entity #1 | Chains: A
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 254 12
95 % 180 265 16
90 % 180 265 17
70 % 205 332 17
50 % 486 754 4
40 % 491 759 7
30 % 947 1293 6
Entity #2 | Chains: B
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 149 214 42
95 % 177 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 180 255 21
70 % 221 346 14
50 % 487 754 4
40 % 492 759 7
30 % 948 1293 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures