Sequence Similarity Clusters for the Entities in PDB 1LJW

Entity #1 | Chains: A
hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 171 254 11
95 % 180 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 180 265 18
70 % 205 332 16
50 % 487 755 3
40 % 492 760 6
30 % 953 1299 6
Entity #2 | Chains: B
hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 215 41
95 % 178 251 18 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 181 256 20
70 % 222 347 13
50 % 488 755 3
40 % 493 760 6
30 % 954 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures