Sequence Similarity Clusters for the Entities in PDB 1LJ2

Entity #1 | Chains: A,B
NONSTRUCTURAL RNA-BINDING PROTEIN 34 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46074
95 % 1 1 34515 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 32988
70 % 1 1 29371
50 % 1 1 25070
40 % 1 1 22082
30 % 1 1 18692
Entity #2 | Chains: C,D
eukaryotic protein synthesis initiation factor protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48964
95 % 1 1 36642 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 35001
70 % 1 1 31175
50 % 1 1 26689
40 % 1 1 23608
30 % 1 1 20099

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.