Sequence Similarity Clusters for the Entities in PDB 1LJ2

Entity #1 | Chains: A,B
NONSTRUCTURAL RNA-BINDING PROTEIN 34 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46723
95 % 1 1 34996 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 33422
70 % 1 1 29720
50 % 1 1 25358
40 % 1 1 22331
30 % 1 1 18901
Entity #2 | Chains: C,D
eukaryotic protein synthesis initiation factor protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49646
95 % 1 1 37154 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 35469
70 % 1 1 31554
50 % 1 1 27005
40 % 1 1 23878
30 % 1 1 20331

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures