Sequence Similarity Clusters for the Entities in PDB 1LJ2

Entity #1 | Chains: A,B
NONSTRUCTURAL RNA-BINDING PROTEIN 34 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37960
95 % 1 1 29132 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 1 1 27972
70 % 1 1 25198
50 % 1 1 21606
40 % 1 1 19066
30 % 1 1 15961
Entity #2 | Chains: C,D
eukaryotic protein synthesis initiation factor protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33915
95 % 1 1 29133 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 27973
70 % 1 1 25199
50 % 1 1 21607
40 % 1 1 19067
30 % 1 1 15962

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures