1LI1

The 1.9-A crystal structure of the noncollagenous (NC1) domain of human placenta collagen IV shows stabilization via a novel type of covalent Met-Lys cross-link


Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21577
95 % 3 4 1857 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 1900
70 % 3 4 1918
50 % 5 8 1249
40 % 5 8 1238
30 % 5 8 1237
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39057
95 % 3 4 4331 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 4 4374
70 % 3 4 4271
50 % 6 8 1249
40 % 6 8 1238
30 % 6 8 1237

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures