Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20035
95 % 3 4 1655 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 1688
70 % 3 4 1720
50 % 5 8 1143
40 % 5 8 1152
30 % 5 8 1133
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38324
95 % 3 4 3985 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 4 4015
70 % 3 4 3947
50 % 6 8 1143
40 % 6 8 1152
30 % 6 8 1133

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.