Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19182
95 % 3 4 1588
90 % 3 4 1622
70 % 3 4 1653
50 % 5 8 1100
40 % 5 8 1115
30 % 5 8 1092
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 36759
95 % 3 4 3838
90 % 3 4 3866
70 % 3 4 3799
50 % 6 8 1100
40 % 6 8 1115
30 % 6 8 1092

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.