Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 19812
95 % 3 4 1640
90 % 3 4 1672
70 % 3 4 1706
50 % 5 8 1135
40 % 5 8 1143
30 % 5 8 1124
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37927
95 % 3 4 3948
90 % 3 4 3972
70 % 3 4 3902
50 % 6 8 1135
40 % 6 8 1143
30 % 6 8 1124

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.