Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20276
95 % 3 4 1700 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 1733
70 % 3 4 1751
50 % 5 8 1160
40 % 5 8 1171
30 % 5 8 1149
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38776
95 % 3 4 4041 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 4 4070
70 % 3 4 3999
50 % 6 8 1160
40 % 6 8 1171
30 % 6 8 1149

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.