Sequence Similarity Clusters for the Entities in PDB 1LI1

Entity #1 | Chains: A,B,D,E
Collagen alpha 1(IV) protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20904
95 % 3 4 1743 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 4 1780
70 % 3 4 1802
50 % 5 8 1190
40 % 5 8 1202
30 % 5 8 1178
Entity #2 | Chains: C,F
Collagen alpha 2(IV) protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39881
95 % 3 4 4156 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.4
PDBFlex
90 % 3 4 4189
70 % 3 4 4121
50 % 6 8 1190
40 % 6 8 1202
30 % 6 8 1178

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures