Sequence Similarity Clusters for the Entities in PDB 1LHF

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 289 334 53
95 % 294 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 294 342 67
70 % 294 342 81
50 % 294 342 112
40 % 294 342 135
30 % 294 342 146
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 286 332 52
95 % 325 378 53 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 329 385 56
70 % 341 409 47
50 % 341 409 85
40 % 1618 1885 4
30 % 1627 1899 7
Entity #3 | Chains: I
HIRUDIN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures