Sequence Similarity Clusters for the Entities in PDB 1LHC

Entity #1 | Chains: L
ALPHA-THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 338 45
95 % 186 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 186 339 67
70 % 186 341 78
50 % 186 341 109
40 % 186 341 132
30 % 186 341 140
Entity #2 | Chains: H
ALPHA-THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 162 290 75
95 % 203 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 205 384 48
70 % 205 408 46
50 % 205 408 84
40 % 1148 1863 4
30 % 1155 1885 6
Entity #3 | Chains: I
HIRUDIN protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures