Sequence Similarity Clusters for the Entities in PDB 1LGH

Entity #1 | Chains: A,D,G,J
LIGHT HARVESTING COMPLEX II protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23576
95 % 1 1 20115 Flexibility: No
,
PDBFlex
90 % 1 1 19565
70 % 1 1 18043
50 % 1 1 15710
40 % 1 1 14016
30 % 1 1 11997
Entity #2 | Chains: B,E,H,K
LIGHT HARVESTING COMPLEX II protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23652
95 % 1 1 20186 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 19635
70 % 1 1 18108
50 % 1 1 15765
40 % 1 1 14068
30 % 1 8 342

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.