Sequence Similarity Clusters for the Entities in PDB 1LGH

Entity #1 | Chains: A,D,G,J
LIGHT HARVESTING COMPLEX II protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24635
95 % 1 1 21025 Flexibility: No
Max RMSD: 0.0,
PDBFlex
90 % 1 1 20436
70 % 1 1 18775
50 % 1 1 16309
40 % 1 1 14544
30 % 1 1 12451
Entity #2 | Chains: B,E,H,K
LIGHT HARVESTING COMPLEX II protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24714
95 % 1 1 21099 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 20508
70 % 1 1 18838
50 % 1 1 16362
40 % 1 1 14593
30 % 1 8 383

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures