Sequence Similarity Clusters for the Entities in PDB 1LGH

Entity #1 | Chains: A,D,G,J
LIGHT HARVESTING COMPLEX II protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21002
95 % 1 1 18936 Flexibility: No
Max RMSD: 0.0,
PDBFlex
90 % 1 1 18432
70 % 1 1 16977
50 % 1 1 14802
40 % 1 1 13189
30 % 1 1 11099
Entity #2 | Chains: B,E,H,K
LIGHT HARVESTING COMPLEX II protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21003
95 % 1 1 18937 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 18433
70 % 1 1 16978
50 % 1 1 14803
40 % 1 1 13190
30 % 2 9 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures