Sequence Similarity Clusters for the Entities in PDB 1LGH

Entity #1 | Chains: A,D,G,J
LIGHT HARVESTING COMPLEX II protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24345
95 % 1 1 20791 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 20210
70 % 1 1 18565
50 % 1 1 16138
40 % 1 1 14398
30 % 1 1 12323
Entity #2 | Chains: B,E,H,K
LIGHT HARVESTING COMPLEX II protein, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24424
95 % 1 1 20865 Flexibility: No
Max RMSD: 0.0,
PDBFlex
90 % 1 1 20283
70 % 1 1 18629
50 % 1 1 16191
40 % 1 1 14447
30 % 1 8 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.