Sequence Similarity Clusters for the Entities in PDB 1LGC

Entity #1 | Chains: A,C,E
LEGUME ISOLECTIN II (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28245
95 % 9 10 2265 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 17 19 1231
70 % 17 20 1213
50 % 17 20 1264
40 % 17 20 1276
30 % 17 20 1248
Entity #2 | Chains: H,I,J
DIPEPTIDE protein, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: B,D,F
LEGUME ISOLECTIN II (BETA CHAIN) protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30046
95 % 9 10 2288 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 9 10 2353
70 % 17 20 1219
50 % 17 20 1271
40 % 17 20 1284
30 % 17 20 1256

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.