Sequence Similarity Clusters for the Entities in PDB 1LGB

Entity #1 | Chains: A
LEGUME ISOLECTIN II (ALPHA CHAIN) protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62574
95 % 10 10 2265 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.3
PDBFlex
90 % 19 19 1232
70 % 20 20 1213
50 % 20 20 1265
40 % 20 20 1276
30 % 20 20 1249
Entity #2 | Chains: B
LEGUME ISOLECTIN II (BETA CHAIN) protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 73202
95 % 10 10 2289 Flexibility: No
Max RMSD: 2.5, Avg RMSD: 0.3
PDBFlex
90 % 10 10 2354
70 % 20 20 1219
50 % 20 20 1272
40 % 20 20 1284
30 % 20 20 1257
Entity #3 | Chains: C
LACTOTRANSFERRIN (N2 FRAGMENT) protein, length: 159 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64117
95 % 1 1 44429
90 % 1 1 42164
70 % 1 1 37066
50 % 4 4 15126
40 % 4 4 13465
30 % 4 4 11530

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.