Sequence Similarity Clusters for the Entities in PDB 1LFY

Entity #1 | Chains: A
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 254 12
95 % 241 265 16 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 241 265 17
70 % 299 332 17
50 % 690 754 4
40 % 695 759 7
30 % 1195 1294 6
Entity #2 | Chains: B
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 214 43
95 % 233 250 20 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 238 255 21
70 % 316 346 14
50 % 691 754 4
40 % 696 759 7
30 % 1196 1294 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures