Sequence Similarity Clusters for the Entities in PDB 1LFQ

Entity #1 | Chains: A
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 200 254 12
95 % 210 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 210 265 18
70 % 248 332 17
50 % 590 755 4
40 % 595 760 7
30 % 1073 1299 6
Entity #2 | Chains: B
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 175 215 41
95 % 206 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 210 256 21
70 % 267 347 14
50 % 591 755 4
40 % 596 760 7
30 % 1074 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures