Sequence Similarity Clusters for the Entities in PDB 1LFL

Entity #1 | Chains: A,C,P,R
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 178 222 22
95 % 204 250 19 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 0.7
PDBFlex
90 % 205 251 20
70 % 255 332 15
50 % 603 754 4
40 % 608 759 8
30 % 1048 1218 8
Entity #2 | Chains: B,D,Q,S
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 135 169 51
95 % 210 250 18 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.6
PDBFlex
90 % 214 255 19
70 % 273 346 14
50 % 604 754 4
40 % 609 759 8
30 % 1049 1218 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures