Sequence Similarity Clusters for the Entities in PDB 1LFL

Entity #1 | Chains: A,C,P,R
Hemoglobin alpha chain protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 205 254 12
95 % 215 265 16 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.7
PDBFlex
90 % 215 265 18
70 % 255 332 17
50 % 604 755 4
40 % 609 760 7
30 % 1087 1299 6
Entity #2 | Chains: B,D,Q,S
Hemoglobin beta chain protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 179 215 41
95 % 211 251 19 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 215 256 21
70 % 274 347 14
50 % 605 755 4
40 % 610 760 7
30 % 1088 1299 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures