Sequence Similarity Clusters for the Entities in PDB 1LFD

Entity #1 | Chains: A,C
RALGDS protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 35043
95 % 1 1 30128 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 25907
70 % 1 2 23382
50 % 1 3 16993
40 % 1 3 15045
30 % 1 3 12625
Entity #2 | Chains: B,D
RAS protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27755
95 % 121 186 160 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.6
PDBFlex
90 % 207 294 62
70 % 209 296 73
50 % 235 344 87
40 % 328 546 22
30 % 473 918 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures