Sequence Similarity Clusters for the Entities in PDB 1LFD

Entity #1 | Chains: A,C
RALGDS protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33729
95 % 1 1 29018 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 24974
70 % 1 2 22612
50 % 1 3 16436
40 % 1 3 14552
30 % 1 3 12206
Entity #2 | Chains: B,D
RAS protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26010
95 % 91 155 210 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 165 244 76
70 % 167 246 91
50 % 193 294 101
40 % 284 492 24
30 % 427 851 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures