Sequence Similarity Clusters for the Entities in PDB 1LFD

Entity #1 | Chains: A,C
RALGDS protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34298
95 % 1 1 29498 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 25386
70 % 1 2 22931
50 % 1 3 16693
40 % 1 3 14769
30 % 1 3 12407
Entity #2 | Chains: B,D
RAS protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26511
95 % 111 176 183 Flexibility: Low
Max RMSD: 3.9, Avg RMSD: 1.6
PDBFlex
90 % 195 282 64
70 % 197 284 76
50 % 223 332 85
40 % 315 531 20
30 % 446 884 11

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures