Sequence Similarity Clusters for the Entities in PDB 1LFD

Entity #1 | Chains: A,C
RALGDS protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49334
95 % 1 1 36781 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 24587
70 % 1 2 22333
50 % 1 3 16455
40 % 1 3 14655
30 % 1 3 12537
Entity #2 | Chains: B,D
RAS protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44644
95 % 155 233 79 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 160 238 79
70 % 162 240 93
50 % 188 289 97
40 % 278 483 21
30 % 406 822 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures