Sequence Similarity Clusters for the Entities in PDB 1LFD

Entity #1 | Chains: A,C
RALGDS protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48422
95 % 1 1 36144 Flexibility: Low
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 24154
70 % 1 2 21960
50 % 1 3 16180
40 % 1 3 14422
30 % 1 3 12346
Entity #2 | Chains: B,D
RAS protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43790
95 % 149 226 81 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 154 231 80
70 % 156 233 94
50 % 182 282 95
40 % 271 473 21
30 % 399 812 16

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures