Sequence Similarity Clusters for the Entities in PDB 1LF8

Entity #1 | Chains: A,B,C,D
ADP-ribosylation factor binding protein GGA3 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5107
95 % 2 3 5783 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 2 3 5778
70 % 9 13 1679
50 % 10 14 1605
40 % 10 14 1629
30 % 10 14 1596
Entity #2 | Chains: E,F,G,H
Cation-independent mannose-6-phosphate receptor protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.