Sequence Similarity Clusters for the Entities in PDB 1LEI

Entity #1 | Chains: C
5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 2490
95 % 8 11 2818 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 8 11 2864
70 % 8 11 2837
50 % 9 14 2300
40 % 14 26 1256
30 % 14 26 1228
Entity #4 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3290
95 % 5 10 3733 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 5 10 3791
70 % 5 10 3735
50 % 6 12 3053
40 % 15 26 1256
30 % 15 26 1228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures