Sequence Similarity Clusters for the Entities in PDB 1LEI

Entity #1 | Chains: C
5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3230
95 % 7 10 3422 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.5
PDBFlex
90 % 7 10 3467
70 % 7 10 3420
50 % 8 13 2718
40 % 13 25 1335
30 % 13 25 1315
Entity #4 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3189
95 % 5 10 3640 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 5 10 3697
70 % 5 10 3636
50 % 6 12 2981
40 % 14 25 1335
30 % 14 25 1315

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.