Sequence Similarity Clusters for the Entities in PDB 1LEI

Entity #1 | Chains: C
5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3' dna, length: 17 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 10 2431
95 % 8 11 2765
90 % 8 11 2809
70 % 8 11 2785
50 % 9 14 2266
40 % 14 26 1241
30 % 14 26 1214
Entity #4 | Chains: B
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3227
95 % 5 10 3680 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.8
PDBFlex
90 % 5 10 3733
70 % 5 10 3687
50 % 6 12 3020
40 % 15 26 1241
30 % 15 26 1214

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.