Sequence Similarity Clusters for the Entities in PDB 1LE9

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 3030
95 % 10 11 3023 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 4.1
PDBFlex
90 % 10 11 3076
70 % 10 11 3024
50 % 13 14 2481
40 % 23 27 1288
30 % 23 27 1290
Entity #4 | Chains: B,F
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3899
95 % 9 10 4015 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 9 10 4078
70 % 9 10 3993
50 % 11 13 3083
40 % 24 27 1288
30 % 24 27 1290

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1IKN 1 A PROTEIN (NF-KAPPA-B P65 SUBUNIT) N-TERMINAL AND DIMERIZATION DOMAINS 10090
2 2RAM 2 A, B PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) P65 RESIDUES 19 - 291 10090
3 5U01 1 A, B, C, D Transcription factor p65 UNP residues 19-291 10090
4 1RAM 2 A, B PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) P65 SUBUNIT, RESIDUES 19 - 291 10090
5 1NFI 1 A, C NF-KAPPA-B P65 9606
6 1VKX 3 A PROTEIN (NF-KAPPA B P65 SUBUNIT) 10090
7 2I9T 3 A Transcription factor p65 residues 19-291 10090
8 1LEI 3 A NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT p65 RHR 10090
9 1LE5 3 A, E Nuclear factor NF-kappa-B p65 subunit p65 RHR 10090
10 1LE9 3 A, E NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT p65 RHR 10090
11 3GUT 1 A, C, E, G Transcription factor p65 UNP residues 20-291 9606