Sequence Similarity Clusters for the Entities in PDB 1LE9

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 3078
95 % 10 11 3060 Flexibility: Medium
Max RMSD: 11.7, Avg RMSD: 4.1
PDBFlex
90 % 10 11 3117
70 % 10 11 3076
50 % 13 14 2514
40 % 23 27 1309
30 % 23 27 1304
Entity #4 | Chains: B,F
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3973
95 % 9 10 4075 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 9 10 4138
70 % 9 10 4057
50 % 11 13 3128
40 % 24 27 1309
30 % 24 27 1304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1A3Q 3 A, B PROTEIN (NUCLEAR FACTOR KAPPA-B P52) 9606
2 1IKN 1 A PROTEIN (NF-KAPPA-B P65 SUBUNIT) N-TERMINAL AND DIMERIZATION DOMAINS 10090
3 1NFK 2 A, B PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) 10090
4 2RAM 2 A, B PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) P65 RESIDUES 19 - 291 10090
5 1OOA 2 A, B Nuclear factor NF-kappa-B p105 subunit 10090
6 5U01 1 A, B, C, D Transcription factor p65 UNP residues 19-291 10090
7 1RAM 2 A, B PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) P65 SUBUNIT, RESIDUES 19 - 291 10090
8 1NFI 1 A, C NF-KAPPA-B P65 9606
9 1VKX 3 A PROTEIN (NF-KAPPA B P65 SUBUNIT) 10090
10 1VKX 4 B PROTEIN (NF-KAPPA B P50 SUBUNIT) 10090
11 2I9T 3 A Transcription factor p65 residues 19-291 10090
12 2I9T 4 B Nuclear factor NF-kappa-B p105 subunit residues 39-350 10090
13 1GJI 3 A, B C-REL PROTO-ONCOGENE PROTEIN Rel homology region 9031
14 1LEI 3 A NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT p65 RHR 10090
15 1LEI 4 B NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT p50 RHR 10090
16 2O61 4 B Nuclear factor NF-kappa-B p105 subunit RHR region 9606
17 1LE5 3 A, E Nuclear factor NF-kappa-B p65 subunit p65 RHR 10090
18 1LE5 4 B, F Nuclear factor NF-kappa-B p50 subunit p50 RHR 10090
19 3DO7 2 A Avian reticuloendotheliosis viral (V-rel) oncogene related B RHR (UNP residues 88-383) 10090
20 3DO7 3 B Nuclear factor NF-kappa-B p100 subunit RHR (UNP residues 37-329) 9606
21 2V2T 1 A TRANSCRIPTION FACTOR RELB RESIDUES 91-378 10090
22 2V2T 2 B NUCLEAR FACTOR NF-KAPPA-B P105 SUBUNIT NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT, RESIDUES 38-363 10090
23 1LE9 3 A, E NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT p65 RHR 10090
24 1LE9 4 B, F NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT p50 RHR 10090
25 5ZMC 4 A Nuclear factor NF-kappa-B p100 subunit 9606
26 3GUT 1 A, C, E, G Transcription factor p65 UNP residues 20-291 9606
27 3GUT 2 B, D, F, H Nuclear factor NF-kappa-B p105 subunit UNP residues 41-352 9606