Sequence Similarity Clusters for the Entities in PDB 1LE9

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 2431
95 % 10 11 2765 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 5.0
PDBFlex
90 % 10 11 2809
70 % 10 11 2785
50 % 13 14 2266
40 % 23 26 1241
30 % 23 26 1214
Entity #4 | Chains: B,F
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3227
95 % 9 10 3680 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.8
PDBFlex
90 % 9 10 3733
70 % 9 10 3687
50 % 11 12 3020
40 % 24 26 1241
30 % 24 26 1214

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.