Sequence Similarity Clusters for the Entities in PDB 1LE9

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 10 2543
95 % 10 11 2864
90 % 10 11 2909
70 % 10 11 2886
50 % 13 14 2364
40 % 23 26 1281
30 % 23 26 1249
Entity #4 | Chains: B,F
NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 9 3357
95 % 9 10 3809 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 9 10 3865
70 % 9 10 3809
50 % 11 12 3111
40 % 24 26 1281
30 % 24 26 1249

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures