Sequence Similarity Clusters for the Entities in PDB 1LE8

Entity #1 | Chains: C
5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*CP*AP*TP*CP*A)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(*TP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*AP*CP*AP*TP*G)-3' dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
MATING-TYPE PROTEIN A-1 protein, length: 53 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70174
95 % 1 1 48708
90 % 1 1 46297
70 % 1 1 40773
50 % 1 1 34883
40 % 1 1 30721
30 % 1 1 25943
Entity #4 | Chains: B
Mating-type protein alpha-2 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 68188
95 % 2 4 14350
90 % 2 4 14080
70 % 2 4 13191
50 % 2 4 11757
40 % 2 4 10662
30 % 2 4 9242

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.