Sequence Similarity Clusters for the Entities in PDB 1LE5

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
Nuclear factor NF-kappa-B p65 subunit protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2464
95 % 9 11 2794 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 9 11 2840
70 % 9 11 2814
50 % 10 14 2278
40 % 17 26 1249
30 % 17 26 1221
Entity #4 | Chains: B,F
Nuclear factor NF-kappa-B p50 subunit protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3264
95 % 7 10 3708 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 7 10 3765
70 % 7 10 3710
50 % 8 12 3036
40 % 18 26 1249
30 % 18 26 1221

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.