Sequence Similarity Clusters for the Entities in PDB 1LE5

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
Nuclear factor NF-kappa-B p65 subunit protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 10 2923
95 % 9 11 2923 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.8
PDBFlex
90 % 9 11 2981
70 % 9 11 2933
50 % 10 14 2410
40 % 17 26 1287
30 % 17 26 1282
Entity #4 | Chains: B,F
Nuclear factor NF-kappa-B p50 subunit protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3761
95 % 7 10 3886 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.6
PDBFlex
90 % 7 10 3947
70 % 7 10 3870
50 % 8 12 3156
40 % 18 26 1287
30 % 18 26 1282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures