Sequence Similarity Clusters for the Entities in PDB 1LE5

Entity #1 | Chains: C,G
5'-D(*TP*GP*GP*GP*AP*AP*AP*TP*TP*CP*CP*T)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D,H
5'-D(*AP*AP*GP*GP*AP*AP*TP*TP*TP*CP*CP*C)-3' dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,E
Nuclear factor NF-kappa-B p65 subunit protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 9 3192
95 % 8 10 3388 Flexibility: Medium
Max RMSD: 10.7, Avg RMSD: 4.5
PDBFlex
90 % 8 10 3431
70 % 8 10 3385
50 % 9 13 2696
40 % 16 25 1319
30 % 16 25 1304
Entity #4 | Chains: B,F
Nuclear factor NF-kappa-B p50 subunit protein, length: 313 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 3151
95 % 7 10 3600 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 2.3
PDBFlex
90 % 7 10 3653
70 % 7 10 3595
50 % 8 12 2954
40 % 17 25 1319
30 % 17 25 1304

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.