Sequence Similarity Clusters for the Entities in PDB 1LDQ

Entity #1 | Chains: A,B
Avidin protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 2113
95 % 23 25 741 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 25 27 707
70 % 36 40 385
50 % 40 44 439
40 % 40 44 466
30 % 197 202 96

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.