Sequence Similarity Clusters for the Entities in PDB 1LDP

Entity #1 | Chains: H
MHC CLASS I H-2LD protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26500
95 % 2 2 22209
90 % 57 61 276
70 % 659 692 6
50 % 661 697 6
40 % 706 748 10
30 % 805 868 15
Entity #2 | Chains: L
MHC CLASS I H-2LD protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 133 95
95 % 197 217 64
90 % 197 217 68
70 % 825 885 4
50 % 842 907 3
40 % 842 907 9
30 % 842 907 14
Entity #3 | Chains: P
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Q
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.