Sequence Similarity Clusters for the Entities in PDB 1LDP

Entity #1 | Chains: H
MHC CLASS I H-2LD protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25429
95 % 2 2 21291
90 % 53 57 286
70 % 632 664 7
50 % 634 669 7
40 % 676 717 10
30 % 772 834 15
Entity #2 | Chains: L
MHC CLASS I H-2LD protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 131 95
95 % 193 213 66
90 % 193 213 70
70 % 799 859 5
50 % 814 879 5
40 % 814 879 9
30 % 814 879 14
Entity #3 | Chains: P
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Q
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.