Sequence Similarity Clusters for the Entities in PDB 1LDP

Entity #1 | Chains: H
MHC CLASS I H-2LD protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27864
95 % 2 2 23301 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 64 70 266
70 % 698 736 6
50 % 709 750 6
40 % 745 792 10
30 % 854 923 15
Entity #2 | Chains: L
MHC CLASS I H-2LD protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 126 136 98
95 % 213 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 213 234 66
70 % 873 940 4
50 % 890 962 3
40 % 890 962 7
30 % 890 962 12
Entity #3 | Chains: P
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Q
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures