Sequence Similarity Clusters for the Entities in PDB 1LDP

Entity #1 | Chains: H
MHC CLASS I H-2LD protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 27430
95 % 2 2 22946 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 63 69 265
70 % 689 727 6
50 % 691 732 6
40 % 736 783 10
30 % 841 909 15
Entity #2 | Chains: L
MHC CLASS I H-2LD protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 125 135 97
95 % 209 230 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 209 230 65
70 % 858 924 4
50 % 875 946 3
40 % 875 946 7
30 % 875 946 12
Entity #3 | Chains: P
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Q
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures