Sequence Similarity Clusters for the Entities in PDB 1LDP

Entity #1 | Chains: H
MHC CLASS I H-2LD protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26870
95 % 2 2 22516 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 61 67 258
70 % 679 716 6
50 % 681 721 6
40 % 726 772 10
30 % 829 896 15
Entity #2 | Chains: L
MHC CLASS I H-2LD protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 125 135 96
95 % 207 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 207 228 65
70 % 848 912 4
50 % 865 934 3
40 % 865 934 7
30 % 865 934 12
Entity #3 | Chains: P
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Q
PEPTIDE protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.