Sequence Similarity Clusters for the Entities in PDB 1LDN

Entity #1 | Chains: A,B,C,D,E,F,G,H
L-LACTATE DEHYDROGENASE protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 4157
95 % 1 3 4516 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 3 4557
70 % 1 3 4451
50 % 10 22 649
40 % 120 170 83
30 % 164 233 46

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures