Sequence Similarity Clusters for the Entities in PDB 1LDN

Entity #1 | Chains: A,B,C,D,E,F,G,H
L-LACTATE DEHYDROGENASE protein, length: 316 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 3364
95 % 1 3 4131 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 3 4168
70 % 1 3 4110
50 % 10 22 608
40 % 118 166 54
30 % 159 228 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures